Research workbench
Hypothetical protein TM841 from Thermotoga maritima reveals fatty acid binding function
Analyse Hypothetical protein TM841 from Thermotoga maritima reveals fatty acid binding… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1MGP
- Type
- protein
- Length
- 276 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2
- Source
- Thermotoga maritima
- Molecule
- Hypothetical protein TM841
- UniProt
- Q9X1H9
- Ligands
- PLM
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · resolution 2 · 1 distinct chain · 39% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein TM841 | protein | 276 | 39% helix, 28% strand | Q9X1H9 |
Ligands and binding sites
- PLM · Palmitic acid · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.75 | 0.95 | 30 | PLM |
| 2 | 212 | 0.61 | 0.82 | 28 | empty |
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 1MGP · Hypothetical protein TM841 from thermotoga maritima reveals fatty acid binding function · the same entry in another collection · chain A against A, TM-score 1.00
- Q9X1H9 · AlphaFold monomer V2.0 prediction for fatty acid-binding protein TM_1468 (Q9X1H9) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9X1H9
- Elsewhere: RCSB PDB 1MGP · PDBe 1MGP · UniProt Q9X1H9
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