Research workbench
Crystal structure of pan-H7, anti-hemagglutinin monoclonal antibody H7.5 (Fab fragment)
Analyse Crystal structure of pan-H7, anti-hemagglutinin monoclonal antibody H7.5 (Fab… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6BTJ
- Type
- protein
- Length
- 860 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.999
- Source
- Homo sapiens
- Molecule
- Heavy chain of H7.5 Fab; Light chain of H7.5 Fab
- Pockets
- 6 · best druggability 0.63
Structure
x-ray diffraction · resolution 1.999 · 3 distinct chains · 9% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Heavy chain of H7.5 Fab | protein | 216 | 10% helix, 50% strand | — |
| B, L | Light chain of H7.5 Fab | protein | 213 | 7% helix, 50% strand | — |
| H | Heavy chain of H7.5 Fab | protein | 218 | 10% helix, 49% strand | — |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 496 | 0.63 | 0.75 | 60 | empty |
| 2 | 383 | 0.55 | 0.74 | 50 | empty |
| 3 | 312 | 0.54 | 0.75 | 45 | empty |
| 4 | 87 | 0.38 | 0.76 | 22 | empty |
| 5 | 81 | 0.35 | 0.76 | 25 | empty |
Interfaces
4 interfaces between chains.
- A–B · 1817 Ų buried · 20 hydrogen bonds · protein-protein
- H–L · 1800 Ų buried · 19 hydrogen bonds · protein-protein
- A–H · 757 Ų buried · 5 hydrogen bonds · protein-protein
- B–L · 15 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
- 6BTJ · Crystal structure of pan-H7, anti-hemagglutinin monoclonal antibody H7.5 (Fab fragment) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6BTJ · PDBe 6BTJ
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