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Crystal structure of Arabidopsis thaliana SOBER1 L63A

Analyse Crystal structure of Arabidopsis thaliana SOBER1 L63A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6AVW
Type: protein
Length: 210 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.14449
Source: Arabidopsis thaliana
Molecule: Carboxylesterase SOBER1
EC: 3.1.1.-
UniProt: Q84WK4
Pockets: 2 · best druggability 0.40

Structure

x-ray diffraction · resolution 2.14449 · 1 distinct chain · 40% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Carboxylesterase SOBER1 (EC 3.1.1.-)	protein	210	40% helix, 20% strand	Q84WK4

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	62	0.40	0.80	17	empty
2	68	0.37	0.78	14	empty

Compared structures

6AVW · Crystal structure of arabidopsis thaliana SOBER1 L63A · the same entry in another collection · chain A against A, TM-score 1.00
Q84WK4 · AlphaFold monomer V2.0 prediction for carboxylesterase SOBER1 (Q84WK4) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q84WK4
Elsewhere: RCSB PDB 6AVW · PDBe 6AVW · UniProt Q84WK4

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