Research workbench
Scabin (W128Y) toxin from Streptomyces scabies
Analyse Scabin (W128Y) toxin from Streptomyces scabies in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6APY
- Type
- protein
- Length
- 164 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.5
- Source
- Streptomyces scabiei (strain 87.22)
- Molecule
- Scabin
- UniProt
- C9Z6T8
- Pockets
- 2 · best druggability 0.57
Structure
x-ray diffraction · resolution 1.5 · 1 distinct chain · 21% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Scabin | protein | 164 | 21% helix, 24% strand | C9Z6T8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 213 | 0.57 | 0.79 | 27 | empty |
| 2 | 55 | 0.39 | 0.80 | 18 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6APY · Scabin (W128Y) toxin from streptomyces scabies · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C9Z6T8
- Elsewhere: RCSB PDB 6APY · PDBe 6APY · UniProt C9Z6T8
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