Research workbench
Fluorescent protein from Acropora digitifera
Analyse Fluorescent protein from Acropora digitifera in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6AA7
- Type
- protein
- Length
- 450 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.8
- Source
- Acropora digitifera
- Molecule
- Fluorescent protein
- UniProt
- A0A1S7IWI8
- Pockets
- 4 · best druggability 0.74
Structure
x-ray diffraction · resolution 1.8 · 2 distinct chains · 8% helix, 55% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluorescent protein | protein | 226 | 8% helix, 54% strand | A0A1S7IWI8 |
| B | Fluorescent protein | protein | 224 | 8% helix, 55% strand | A0A1S7IWI8 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 73 | 0.74 | 0.98 | 27 | empty |
| 2 | 65 | 0.74 | 0.98 | 22 | empty |
| 3 | 64 | 0.72 | 0.98 | 22 | empty |
| 4 | 55 | 0.28 | 0.75 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 1079 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 6AA7 · Fluorescent protein from acropora digitifera · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1S7IWI8
- Elsewhere: RCSB PDB 6AA7 · PDBe 6AA7 · UniProt A0A1S7IWI8
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