Research workbench
Structure of phAimR-Ligand
Analyse Structure of phAimR-Ligand in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5ZVW
- Type
- protein
- Length
- 341 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.292
- Source
- Bacillus phage phi3T; SYNTHETIC CONSTRUCT
- Molecule
- AimR transcriptional regulator; Ser-ala-ile-arg-gly-ala
- UniProt
- P0DOE3
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · resolution 2.292 · 2 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AimR transcriptional regulator | protein | 335 | 72% helix, 0% strand | P0DOE3 |
| B | Ser-ala-ile-arg-gly-ala | protein | 6 | 0% helix, 0% strand | — |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 360 | 0.67 | 0.81 | 44 | empty |
| 2 | 120 | 0.50 | 0.80 | 20 | empty |
| 3 | 86 | 0.45 | 0.81 | 19 | empty |
| 4 | 59 | 0.29 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 616 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5ZVW · Structure of phaimr-ligand · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DOE3
- Elsewhere: RCSB PDB 5ZVW · PDBe 5ZVW · UniProt P0DOE3
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