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Crystal structure of shaft pilin spaD from Lactobacillus rhamnosus GG - K365A mutant

Analyse Crystal structure of shaft pilin spaD from Lactobacillus rhamnosus GG - K365A… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5Z24
Type: protein
Length: 872 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Lactobacillus rhamnosus GG
Molecule: Pilus assembly protein
UniProt: A0A179XFF5
Pockets: 3 · best druggability 0.68

Structure

x-ray diffraction · resolution 2.4 · 2 distinct chains · 9% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pilus assembly protein	protein	441	10% helix, 45% strand	A0A179XFF5
B	Pilus assembly protein	protein	431	9% helix, 45% strand	A0A179XFF5

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	670	0.68	0.76	68	empty
2	633	0.67	0.76	58	empty
3	82	0.34	0.75	17	empty

Modifications

Observed in the structure: 4 isopeptide (isopeptide).

Compared structures

5Z24 · Crystal structure of shaft pilin spad from lactobacillus rhamnosus gg - K365A mutant · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A179XFF5
Elsewhere: RCSB PDB 5Z24 · PDBe 5Z24 · UniProt A0A179XFF5

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