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Structure of APUM23-GAAUUGACGG

Analyse Structure of APUM23-GAAUUGACGG in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5WZG
Type: protein + RNA
Length: 544 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.55
Source: Arabidopsis thaliana; SYNTHETIC CONSTRUCT
Molecule: Pumilio homolog 23; RNA (5'-R(*GP*AP*AP*UP*UP*GP*AP*CP*GP*G)-3')
UniProt: Q9C552
Pockets: 2 · best druggability 0.64

Structure

x-ray diffraction · resolution 2.55 · 2 distinct chains · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pumilio homolog 23	protein	534	72% helix, 0% strand	Q9C552
B	RNA (5'-R(GPAPAPUPUPGPAPCPGPG)-3')	rna	10	—	—

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	280	0.64	0.81	37	empty
2	62	0.29	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 1637 Å² buried · 63 hydrogen bonds · protein-nucleic

Compared structures

5WZG · Structure of APUM23-gaauugacgg · the same entry in another collection · chain A against A, TM-score 1.00
Q9C552 · AlphaFold monomer V2.0 prediction for pumilio homolog 23 (Q9C552) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9C552
Elsewhere: RCSB PDB 5WZG · PDBe 5WZG · UniProt Q9C552

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