Research workbench

Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin biosynthesis

Analyse Solution Structure of KstB-PCP loaded with nicotinic acid in kosinostatin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5WPY
Type: protein
Length: 89 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: NOT
Source: Micromonospora sp. TP-A0468
Molecule: Peptidyl carrier protein
UniProt: A0A023GUP0
Ligands: PN7
Pockets: 1 · best druggability 0.79

Structure

solution nmr · resolution NOT · 1 distinct chain · 62% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidyl carrier protein	protein	89	62% helix, 0% strand	A0A023GUP0

Ligands and binding sites

PN7 · N~3~-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy) butanoyl]-N-(2-sulfanylethyl)-beta-alaninamide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	290	0.79	0.90	38	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

5WPY · Solution structure of kstb-pcp loaded with nicotinic acid in kosinostatin biosynthesis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A023GUP0
Elsewhere: RCSB PDB 5WPY · PDBe 5WPY · UniProt A0A023GUP0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.