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PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with starting material

Analyse PanDDA analysis group deposition -- Crystal Structure of PHIP in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5S96
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.17
Source: Homo sapiens
Molecule: PH-interacting protein
UniProt: Q8WWQ0
Ligands: SAL
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · resolution 1.17 · 1 distinct chain · 70% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PH-interacting protein	protein	119	70% helix, 0% strand	Q8WWQ0

Ligands and binding sites

SAL · 2-hydroxybenzoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	102	0.51	0.82	20	SAL

Compared structures

5S96 · Pandda analysis group deposition -- crystal structure of phip in complex with starting… · the same entry in another collection · chain A against A, TM-score 1.00
Q8WWQ0 · AlphaFold monomer V2.0 prediction for pH-interacting protein (Q8WWQ0) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8WWQ0
Elsewhere: RCSB PDB 5S96 · PDBe 5S96 · UniProt Q8WWQ0

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