Research workbench
Histidine triad nucleotide-binding protein (hint) from rabbit complexed with 8-br-AMP
Analyse Histidine triad nucleotide-binding protein (hint) from rabbit complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5RHN
- Type
- protein
- Length
- 115 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.31
- Source
- Oryctolagus cuniculus
- Molecule
- Histidine triad nucleotide-binding protein
- UniProt
- P80912
- Ligands
- 8BR
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · resolution 2.31 · 1 distinct chain · 29% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histidine triad nucleotide-binding protein | protein | 115 | 29% helix, 22% strand | P80912 |
Ligands and binding sites
- 8BR · 8-bromo-adenosine-5'-monophosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 56 | 0.29 | 0.74 | 17 | 8BR |
Compared structures
- 5RHN · Histidine triad nucleotide-binding protein (hint) from rabbit complexed with 8-br-AMP · the same entry in another collection · chain A against A, TM-score 1.00
- P80912 · AlphaFold monomer V2.0 prediction for histidine triad nucleotide- binding protein 1… · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80912
- Elsewhere: RCSB PDB 5RHN · PDBe 5RHN · UniProt P80912
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