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Structure of Undecaprenyl-Pyrophosphate Phosphatase, BacA

Analyse Structure of Undecaprenyl-Pyrophosphate Phosphatase, BacA in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OON
Type: protein
Length: 270 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.6
Source: Escherichia coli
Molecule: Undecaprenyl-diphosphatase
EC: 3.6.1.27
UniProt: C3SU37
Ligands: HG
Pockets: 3 · best druggability 0.77

Structure

x-ray diffraction · resolution 2.6 · 1 distinct chain · 74% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Undecaprenyl-diphosphatase (EC 3.6.1.27)	protein	270	74% helix, 1% strand	C3SU37

Ligands and binding sites

HG · Mercury (II) ion · metal · 2 copies · chains A
OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · 2 copies · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	663	0.77	0.82	53	empty
2	60	0.34	0.77	15	empty
3	59	0.33	0.75	13	empty

Compared structures

5OON · Structure of undecaprenyl-pyrophosphate phosphatase, baca · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C3SU37
Elsewhere: RCSB PDB 5OON · PDBe 5OON · UniProt C3SU37

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