Research workbench
Crystal structure of an unmodified A-DNA dodecamer containing 3 consecutive CpG steps
Analyse Crystal structure of an unmodified A-DNA dodecamer containing 3 consecutive CpG… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MVK
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.531
- Source
- synthetic construct
- Molecule
- DNA
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · resolution 1.531 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | DNA | dna | 12 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 243 | 0.44 | 0.73 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 604 Ų buried · 48 hydrogen bonds · nucleic-nucleic
Compared structures
- 5MVK · Crystal structure of an unmodified a-DNA dodecamer containing 3 consecutive cpg steps · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5MVK · PDBe 5MVK
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