Research workbench
Inward open PepTSt from Streptococcus thermophilus crystallized in space group P3121
Analyse Inward open PepTSt from Streptococcus thermophilus crystallized in space group… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5MMT
- Type
- protein
- Length
- 425 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4
- Source
- Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
- Molecule
- Di-or tripeptide:H+ symporter
- UniProt
- Q5M4H8
- Pockets
- 3 · best druggability 0.72
Structure
x-ray diffraction · resolution 3.4 · 1 distinct chain · 84% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Di-or tripeptide:H+ symporter | protein | 425 | 84% helix, 0% strand | Q5M4H8 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 597 | 0.72 | 0.80 | 49 | empty |
| 2 | 542 | 0.65 | 0.75 | 46 | empty |
| 3 | 72 | 0.32 | 0.75 | 19 | empty |
Compared structures
- 5MMT · Inward open peptst from streptococcus thermophilus crystallized in space group P3121 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5M4H8
- Elsewhere: RCSB PDB 5MMT · PDBe 5MMT · UniProt Q5M4H8
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