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Crystal structure of holo human CRBP1

Analyse Crystal structure of holo human CRBP1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5LJC
Type: protein
Length: 134 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.433
Source: Homo sapiens
Molecule: Retinol-binding protein 1
UniProt: P09455
Ligands: RTL, NA
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · resolution 1.433 · 1 distinct chain · 10% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Retinol-binding protein 1	protein	134	10% helix, 54% strand	P09455

Ligands and binding sites

RTL · Retinol · ligand · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	232	0.83	0.95	32	RTL

Compared structures

5LJC · Crystal structure of holo human CRBP1 · the same entry in another collection · chain A against A, TM-score 1.00
P09455 · AlphaFold monomer V2.0 prediction for retinol-binding protein 1 (P09455) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09455
Elsewhere: RCSB PDB 5LJC · PDBe 5LJC · UniProt P09455

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