Research workbench
Crystal structure of N-terminal amidase C187S
Analyse Crystal structure of N-terminal amidase C187S in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5K62
- Type
- protein
- Length
- 432 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.899
- Source
- Saccharomyces cerevisiae (strain CEN.PK113-7D)
- Molecule
- Nta1p
- UniProt
- N1P8Q8
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · resolution 1.899 · 1 distinct chain · 27% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nta1p | protein | 432 | 27% helix, 25% strand | N1P8Q8 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.54 | 0.79 | 28 | empty |
| 2 | 110 | 0.43 | 0.77 | 18 | empty |
Compared structures
- 5K62 · Crystal structure of N-terminal amidase C187S · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt N1P8Q8
- Elsewhere: RCSB PDB 5K62 · PDBe 5K62 · UniProt N1P8Q8
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