Research workbench
3.0 Angstrom Crystal Structure of 3-dehydroquinate Synthase (AroB) from Francisella tularensis in Complex with NAD.
Analyse 3.0 Angstrom Crystal Structure of 3-dehydroquinate Synthase (AroB) from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5HVN
- Type
- protein
- Length
- 354 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3
- Source
- Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
- Molecule
- 3-dehydroquinate synthase
- EC
- 4.2.3.4
- UniProt
- Q5NFS1
- Ligands
- NAD, CL
- Pockets
- 3 · best druggability 0.77
Structure
x-ray diffraction · resolution 3 · 1 distinct chain · 52% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-dehydroquinate synthase (EC 4.2.3.4) | protein | 354 | 52% helix, 20% strand | Q5NFS1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 868 | 0.77 | 0.80 | 77 | NAD |
| 2 | 97 | 0.41 | 0.77 | 24 | empty |
| 3 | 67 | 0.30 | 0.74 | 14 | empty |
Compared structures
- 5HVN · 3.0 ångström crystal structure of 3-dehydroquinate synthase (arob) from francisella… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5NFS1 · AlphaFold monomer V2.0 prediction for 3-dehydroquinate synthase (Q5NFS1) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5NFS1
- Elsewhere: RCSB PDB 5HVN · PDBe 5HVN · UniProt Q5NFS1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.