Research workbench

putative sugar kinases from Synechococcus elongatus PCC7942-apo form

Analyse putative sugar kinases from Synechococcus elongatus PCC7942-apo form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5HTN
Type: protein
Length: 418 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.301
Source: Synechococcus elongatus (strain PCC 7942)
Molecule: Probable sugar kinase
UniProt: Q31KC7
Pockets: 3 · best druggability 0.69

Structure

x-ray diffraction · resolution 2.301 · 1 distinct chain · 32% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Probable sugar kinase	protein	418	32% helix, 23% strand	Q31KC7

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	650	0.69	0.77	75	empty
2	66	0.37	0.79	15	empty
3	52	0.27	0.74	17	empty

Compared structures

5HTN · Putative sugar kinases from synechococcus elongatus PCC7942-apo form · the same entry in another collection · chain A against A, TM-score 1.00
Q31KC7 · AlphaFold monomer V2.0 prediction for D-ribulose kinase (Q31KC7) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q31KC7
Elsewhere: RCSB PDB 5HTN · PDBe 5HTN · UniProt Q31KC7

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