Research workbench
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU
Analyse SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5FK4
- Type
- RNA
- Length
- 93 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.43
- Molecule
- SAM-I riboswitch
- Ligands
- SAM, BA
- Pockets
- 2 · best druggability 0.77
Structure
x-ray diffraction · resolution 2.43 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SAM-I riboswitch | rna | 93 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1092 | 0.77 | 0.80 | 49 | SAM, BA |
| 2 | 687 | 0.68 | 0.77 | 36 | BA |
Compared structures
- 5FK4 · SAM-I riboswitch bearing the H. marismortui kt-7 variant 3BN is uu · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5FK4 · PDBe 5FK4
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