Research workbench
X-ray Free Electron Laser Structure of Cytochrome C Peroxidase
Analyse X-ray Free Electron Laser Structure of Cytochrome C Peroxidase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5EJX
- Type
- protein
- Length
- 291 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.5
- Source
- Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- Molecule
- Cytochrome c peroxidase, mitochondrial
- EC
- 1.11.1.5
- UniProt
- P00431
- Ligands
- HEM, PO4
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · resolution 1.5 · 1 distinct chain · 51% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome c peroxidase, mitochondrial (EC 1.11.1.5) | protein | 291 | 51% helix, 8% strand | P00431 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 319 | 0.81 | 0.91 | 43 | HEM |
| 2 | 104 | 0.40 | 0.76 | 20 | empty |
Compared structures
- 5EJX · X-ray free electron laser structure of cytochrome C peroxidase · the same entry in another collection · chain A against A, TM-score 1.00
- P00431 · AlphaFold monomer V2.0 prediction for cytochrome C peroxidase, mitochondrial (P00431) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00431
- Elsewhere: RCSB PDB 5EJX · PDBe 5EJX · UniProt P00431
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