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Crystal structure of OsYchF1 at pH 7.85

Analyse Crystal structure of OsYchF1 at pH 7.85 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5EE1
Type: protein
Length: 363 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.55
Source: Oryza sativa subsp. japonica
Molecule: Obg-like ATPase 1
EC: 3.6.5.-
UniProt: Q6Z1J6
Pockets: 7 · best druggability 0.62

Structure

x-ray diffraction · resolution 2.55 · 1 distinct chain · 47% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Obg-like ATPase 1 (EC 3.6.5.-)	protein	363	47% helix, 19% strand	Q6Z1J6

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	68	0.62	0.91	26	empty
2	174	0.47	0.75	26	empty
3	78	0.45	0.81	21	empty
4	76	0.39	0.78	17	empty
5	91	0.34	0.74	17	empty

Compared structures

5EE1 · Crystal structure of OSYCHF1 at pH 7.85 · the same entry in another collection · chain A against A, TM-score 1.00
Q6Z1J6 · AlphaFold monomer V2.0 prediction for obg-like ATPase 1 (Q6Z1J6) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6Z1J6
Elsewhere: RCSB PDB 5EE1 · PDBe 5EE1 · UniProt Q6Z1J6

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