Research workbench
CurF ER cyclopropanase from curacin A biosynthetic pathway
Analyse CurF ER cyclopropanase from curacin A biosynthetic pathway in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5DP2
- Type
- protein
- Length
- 335 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 0.96
- Source
- Lyngbya majuscula
- Molecule
- CurF
- UniProt
- Q6DNE7
- Ligands
- NAP
- Pockets
- 2 · best druggability 0.81
Structure
x-ray diffraction · resolution 0.96 · 1 distinct chain · 36% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CurF | protein | 335 | 36% helix, 25% strand | Q6DNE7 |
Ligands and binding sites
- NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 561 | 0.81 | 0.86 | 51 | NAP |
| 2 | 166 | 0.52 | 0.79 | 29 | empty |
Compared structures
- 5DP2 · Curf er cyclopropanase from curacin a biosynthetic pathway · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6DNE7
- Elsewhere: RCSB PDB 5DP2 · PDBe 5DP2 · UniProt Q6DNE7
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