Research workbench

A complex of the synthetic siderophore analogue Fe(III)-8-LICAM with the CeuE periplasmic protein from Campylobacter jejuni

Analyse A complex of the synthetic siderophore analogue Fe(III)-8-LICAM with the CeuE… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5AD1
Type: protein
Length: 290 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.32
Source: CAMPYLOBACTER JEJUNI
Molecule: Enterochelin uptake periplasmic binding protein
UniProt: Q0P8Q4
Ligands: 8LC, FE
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · resolution 1.32 · 1 distinct chain · 42% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Enterochelin uptake periplasmic binding protein	protein	290	42% helix, 21% strand	Q0P8Q4

Ligands and binding sites

8LC · N,N'-octane-1,8-diylbis(2,3-dihydroxybenzamide) · ligand · chains A
FE · Fe (III) ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	186	0.56	0.80	38	FE

Compared structures

5AD1 · A complex of the synthetic siderophore analogue FE(III)-8-licam with the ceue periplasmic… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0P8Q4
Elsewhere: RCSB PDB 5AD1 · PDBe 5AD1 · UniProt Q0P8Q4

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.