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Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium atrosepticum (ECA3761), Target EFI-511609, APO structure, domain swapped dimer

Analyse Crystal structure of a domain of unknown function (DUF1537) from Pectobacterium… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4XGJ
Type: protein
Length: 400 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.9
Source: Pectobacterium atrosepticum
Molecule: Uncharacterized protein
UniProt: Q6D0N7
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · resolution 1.9 · 1 distinct chain · 43% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein	protein	400	43% helix, 23% strand	Q6D0N7

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.37	0.79	19	empty
2	81	0.28	0.72	14	empty

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

4XGJ · Crystal structure of a domain of unknown function (DUF1537) from pectobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
Q6D0N7 · AlphaFold monomer V2.0 prediction for D-threonate kinase (Q6D0N7) · a predicted model of the same protein · chain A against A, TM-score 0.80

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6D0N7
Elsewhere: RCSB PDB 4XGJ · PDBe 4XGJ · UniProt Q6D0N7

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