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Structure of a UbiA homolog from Archaeoglobus fulgidus

Analyse Structure of a UbiA homolog from Archaeoglobus fulgidus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4TQ5
Type: protein
Length: 275 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.2023
Source: Archaeoglobus fulgidus
Molecule: prenyltransferase
UniProt: O28625
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · resolution 3.2023 · 1 distinct chain · 75% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	prenyltransferase	protein	275	75% helix, 0% strand	O28625

Ligands and binding sites

BOG · octyl beta-D-glucopyranoside · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	799	0.82	0.84	74	empty
2	64	0.33	0.75	15	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

4TQ5 · Structure of a ubia homolog from archaeoglobus fulgidus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O28625
Elsewhere: RCSB PDB 4TQ5 · PDBe 4TQ5 · UniProt O28625

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