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Crystal structure of 6-phosphogluconolactonase from Mycobacterium smegmatis N131D mutant
Analyse Crystal structure of 6-phosphogluconolactonase from Mycobacterium smegmatis… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4TM8
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.81
- Source
- Mycobacterium smegmatis
- Molecule
- 6-phosphogluconolactonase
- EC
- 3.1.1.31
- UniProt
- A0QWX6
- Ligands
- SO4
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · resolution 1.81 · 1 distinct chain · 39% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 6-phosphogluconolactonase (EC 3.1.1.31) | protein | 245 | 39% helix, 21% strand | A0QWX6 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 123 | 0.45 | 0.79 | 23 | SO4 |
Compared structures
- 4TM8 · Crystal structure of 6-phosphogluconolactonase from mycobacterium smegmatis N131D mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0QWX6
- Elsewhere: RCSB PDB 4TM8 · PDBe 4TM8 · UniProt A0QWX6
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