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The crystal structure of an immunity protein NMB0503 from Neisseria meningitidis MC58
Analyse The crystal structure of an immunity protein NMB0503 from Neisseria… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4Q7O
- Type
- protein
- Length
- 268 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.45
- Source
- Neisseria meningitidis
- Molecule
- Immunity protein
- UniProt
- Q7DDN8
- Ligands
- BR
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · resolution 1.45 · 2 distinct chains · 52% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Immunity protein | protein | 133 | 50% helix, 16% strand | Q7DDN8 |
| B | Immunity protein | protein | 135 | 54% helix, 16% strand | Q7DDN8 |
Ligands and binding sites
- BR · Bromide ion · ion · 12 copies · chains A, B
- FMT · Formic acid · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 69 | 0.36 | 0.77 | 18 | BR |
Interfaces
1 interface between chains.
- A–B · 1102 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 4Q7O · The crystal structure of an immunity protein NMB0503 from neisseria meningitidis MC58 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7DDN8
- Elsewhere: RCSB PDB 4Q7O · PDBe 4Q7O · UniProt Q7DDN8
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