Research workbench

Crystal structure of Nogo-receptor-2

Analyse Crystal structure of Nogo-receptor-2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4P8S
Type: protein
Length: 282 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.8
Source: Rattus norvegicus
Molecule: Reticulon-4 receptor-like 2
UniProt: Q80WD1
Ligands: NAG, NDG

Structure

x-ray diffraction · resolution 1.8 · 1 distinct chain · 10% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Reticulon-4 receptor-like 2	protein	282	10% helix, 18% strand	Q80WD1

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
NDG · 2-acetamido-2-deoxy-alpha-D-glucopyranose · sugar · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide, 3 glycan (disulfide, N-glycosylation).

Compared structures

4P8S · Crystal structure of nogo-receptor-2 · the same entry in another collection · chain A against A, TM-score 1.00
Q80WD1 · AlphaFold monomer V2.0 prediction for reticulon-4 receptor-like 2 (Q80WD1) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q80WD1
Elsewhere: RCSB PDB 4P8S · PDBe 4P8S · UniProt Q80WD1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.