Research workbench
AlphaFold monomer V2.0 prediction for D-alanine--D-alanine ligase (Q8NQV2)
Analyse AlphaFold monomer V2.0 prediction for D-alanine--D-alanine ligase (Q8NQV2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8NQV2
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x29F5a997C9c963C0f8d9eA83ae506aA675743654
- Molecule
- D-alanine--D-alanine ligase
- UniProt
- Q8NQV2
- Pockets
- 6 · best druggability 0.79
Structure
1 distinct chain · 31% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D-alanine--D-alanine ligase | protein | 360 | 31% helix, 26% strand | Q8NQV2 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 386 | 0.79 | 0.88 | 57 | empty |
| 2 | 83 | 0.41 | 0.78 | 16 | empty |
| 3 | 92 | 0.41 | 0.78 | 16 | empty |
| 4 | 98 | 0.38 | 0.76 | 18 | empty |
| 5 | 71 | 0.35 | 0.76 | 18 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8NQV2
- Elsewhere: UniProt Q8NQV2 · AlphaFold DB Q8NQV2
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