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AlphaFold monomer V2.0 prediction for diaminopimelate decarboxylase (Q9X1K5)

Analyse AlphaFold monomer V2.0 prediction for diaminopimelate decarboxylase (Q9X1K5) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q9X1K5
Type: protein
Length: 386 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x78Cc7f9BF18AF8279e492D45EE7Fe9d7cC6f6D07
Molecule: Diaminopimelate decarboxylase
UniProt: Q9X1K5
Pockets: 2 · best druggability 0.61

Structure

1 distinct chain · 33% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Diaminopimelate decarboxylase	protein	386	33% helix, 25% strand	Q9X1K5

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	248	0.61	0.80	35	empty
2	133	0.44	0.76	24	empty

Compared structures

2YXX · Crystal structure analysis of Diaminopimelate decarboxylate (lysA) · an experimental structure of the same protein · chain A against A, TM-score 0.97
2YXX · Crystal structure analysis of diaminopimelate decarboxylate (lysa) · an experimental structure of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X1K5
Elsewhere: UniProt Q9X1K5 · AlphaFold DB Q9X1K5

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