Research workbench

AlphaFold monomer V2.0 prediction for coatomer subunit alpha (Q27954)

Analyse AlphaFold monomer V2.0 prediction for coatomer subunit alpha (Q27954) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: Q27954
Type: protein
Length: 1,224 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0x92eF3937744b956cB1E76Cc4107c8FF17A74F07d
Molecule: Coatomer subunit alpha
UniProt: Q27954
Pockets: 9 · best druggability 0.84

Structure

1 distinct chain · 28% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Coatomer subunit alpha	protein	1224	28% helix, 28% strand	Q27954

Pockets

9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	839	0.84	0.86	84	empty
2	609	0.81	0.86	50	empty
3	270	0.64	0.81	42	empty
4	338	0.60	0.77	34	empty
5	166	0.51	0.78	27	empty

Compared structures

3MKR · Crystal structure of yeast alpha/epsilon-COP subcomplex of the COPI vesicular coat · an experimental structure of the same protein · chain A against B, TM-score 0.26
3MKR · Crystal structure of yeast ALPHA/EPSILON-cop subcomplex of the copi vesicular coat · an experimental structure of the same protein · chain A against B, TM-score 0.26

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q27954
Elsewhere: UniProt Q27954 · AlphaFold DB Q27954

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