Research workbench
AlphaFold monomer V2.0 prediction for chymosin (P00794)
Analyse AlphaFold monomer V2.0 prediction for chymosin (P00794) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P00794
- Type
- protein
- Length
- 381 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x3298b100681D3A2372Bba3b2f282750dD71629B9
- Molecule
- Chymosin
- UniProt
- P00794
- Pockets
- 4 · best druggability 0.63
Structure
1 distinct chain · 20% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chymosin | protein | 381 | 20% helix, 40% strand | P00794 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 220 | 0.63 | 0.83 | 28 | empty |
| 2 | 283 | 0.63 | 0.81 | 32 | empty |
| 3 | 173 | 0.50 | 0.78 | 29 | empty |
| 4 | 68 | 0.33 | 0.75 | 14 | empty |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 1CMS · The three-dimensional structure of recombinant bovine chymosin at 2.3 ångströms resolution · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 1CMS · The three-dimensional structure of recombinant bovine chymosin at 2.3 ångströms resolution · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 4AA8 · Bovine chymosin at 1.8A resolution · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 4AA8 · Bovine chymosin at 1.8A resolution · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 4AUC · Bovine chymosin in complex with pepstatin a · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 4AUC · Bovine chymosin in complex with Pepstatin A · an experimental structure of the same protein · chain A against A, TM-score 0.83
- 3CMS · Engineering enzyme sub-site specificity: preparation, kinetic characterization and X-ray… · an experimental structure of the same protein · chain A against A, TM-score 0.82
- 3CMS · Engineering enzyme sub-site specificity: preparation, kinetic characterization and X-ray… · an experimental structure of the same protein · chain A against A, TM-score 0.82
- 4CMS · X-ray analyses of aspartic proteinases IV. structure and refinement at 2.2 ångströms… · an experimental structure of the same protein · chain A against A, TM-score 0.82
- 4CMS · X-ray analyses of aspartic proteinases IV. structure and refinement at 2.2 ångströms… · an experimental structure of the same protein · chain A against A, TM-score 0.82
- 1CZI · Chymosin complex with the inhibitor cp-113972 · an experimental structure of the same protein · chain A against E, TM-score 0.82
- 1CZI · Chymosin complex with the inhibitor cp-113972 · an experimental structure of the same protein · chain A against E, TM-score 0.82
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00794
- Elsewhere: UniProt P00794 · AlphaFold DB P00794
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