Research workbench
AlphaFold monomer V2.0 prediction for calcium channel YVC1 (Q12324)
Analyse AlphaFold monomer V2.0 prediction for calcium channel YVC1 (Q12324) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q12324
- Type
- protein
- Length
- 675 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Calcium channel YVC1
- UniProt
- Q12324
- Pockets
- 11 · best druggability 0.82
Structure
1 distinct chain · 69% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium channel YVC1 | protein | 675 | 69% helix, 2% strand | Q12324 |
Pockets
11 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1029 | 0.82 | 0.83 | 105 | empty |
| 2 | 80 | 0.54 | 0.85 | 15 | empty |
| 3 | 206 | 0.52 | 0.77 | 24 | empty |
| 4 | 123 | 0.52 | 0.81 | 24 | empty |
| 5 | 54 | 0.42 | 0.83 | 17 | empty |
Compared structures
- 6WHG · PI3P and calcium bound full-length TRPY1 in detergent · an experimental structure of the same protein · chain A against A, TM-score 0.74
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12324
- Elsewhere: UniProt Q12324 · AlphaFold DB Q12324
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