Research workbench
AlphaFold monomer V2.0 prediction for ribosome biogenesis protein YTM1 (B2VZH2)
Analyse AlphaFold monomer V2.0 prediction for ribosome biogenesis protein YTM1 (B2VZH2) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- B2VZH2
- Type
- protein
- Length
- 460 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xbff27Dc0a932A6E0d9Fe883AAbD1BF27bB95A69F
- Molecule
- Ribosome biogenesis protein YTM1
- UniProt
- B2VZH2
- Pockets
- 6 · best druggability 0.73
Structure
1 distinct chain · 10% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosome biogenesis protein YTM1 | protein | 460 | 10% helix, 47% strand | B2VZH2 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 563 | 0.73 | 0.81 | 50 | empty |
| 2 | 301 | 0.58 | 0.77 | 43 | empty |
| 3 | 50 | 0.39 | 0.82 | 15 | empty |
| 4 | 72 | 0.33 | 0.76 | 16 | empty |
| 5 | 61 | 0.32 | 0.77 | 18 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B2VZH2
- Elsewhere: UniProt B2VZH2 · AlphaFold DB B2VZH2
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