Research workbench
AlphaFold monomer V2.0 prediction for zinc finger transcription factor YRM1 (Q12340)
Analyse AlphaFold monomer V2.0 prediction for zinc finger transcription factor YRM1… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q12340
- Type
- protein
- Length
- 786 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x7c75F0f7d6d136A2b8D4C6C6e9b3D8a697949DF1
- Molecule
- Zinc finger transcription factor YRM1
- UniProt
- Q12340
- Pockets
- 9 · best druggability 0.78
Structure
1 distinct chain · 56% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Zinc finger transcription factor YRM1 | protein | 786 | 56% helix, 3% strand | Q12340 |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 739 | 0.78 | 0.82 | 87 | empty |
| 2 | 125 | 0.71 | 0.91 | 22 | empty |
| 3 | 313 | 0.58 | 0.77 | 42 | empty |
| 4 | 157 | 0.57 | 0.82 | 21 | empty |
| 5 | 75 | 0.48 | 0.83 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12340
- Elsewhere: UniProt Q12340 · AlphaFold DB Q12340
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