Research workbench
AlphaFold monomer V2.0 prediction for transposon TY1-PR3 gag polyprotein (Q6Q5H1)
Analyse AlphaFold monomer V2.0 prediction for transposon TY1-PR3 gag polyprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q6Q5H1
- Type
- protein
- Length
- 440 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x5e58272ea25a05e06901A2eAe9f63939b344e0c6
- Molecule
- Transposon TY1-PR3 gag polyprotein
- UniProt
- Q6Q5H1
- Pockets
- 5 · best druggability 0.51
Structure
1 distinct chain · 31% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY1-PR3 gag polyprotein | protein | 440 | 31% helix, 0% strand | Q6Q5H1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 206 | 0.51 | 0.76 | 21 | empty |
| 2 | 224 | 0.49 | 0.74 | 18 | empty |
| 3 | 108 | 0.41 | 0.76 | 26 | empty |
| 4 | 57 | 0.33 | 0.77 | 15 | empty |
| 5 | 57 | 0.32 | 0.76 | 14 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6Q5H1
- Elsewhere: UniProt Q6Q5H1 · AlphaFold DB Q6Q5H1
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