Research workbench
AlphaFold monomer V2.0 prediction for transposon TY1-PR2 gag-pol polyprotein (P0C2J0)
Analyse AlphaFold monomer V2.0 prediction for transposon TY1-PR2 gag-pol polyprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0C2J0
- Type
- protein
- Length
- 1,756 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x075C02A666A0C5e777e19513919077eafC193ADd
- Molecule
- Transposon TY1-PR2 gag-pol polyprotein
- UniProt
- P0C2J0
- Pockets
- 20 · best druggability 0.77
Structure
1 distinct chain · 28% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY1-PR2 gag-pol polyprotein | protein | 1756 | 28% helix, 14% strand | P0C2J0 |
Pockets
20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1186 | 0.77 | 0.79 | 64 | empty |
| 2 | 1072 | 0.76 | 0.78 | 100 | empty |
| 3 | 77 | 0.73 | 0.97 | 20 | empty |
| 4 | 534 | 0.63 | 0.75 | 47 | empty |
| 5 | 425 | 0.60 | 0.76 | 49 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C2J0
- Elsewhere: UniProt P0C2J0 · AlphaFold DB P0C2J0
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