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AlphaFold monomer V2.0 prediction for spbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein yokd (O32003)

Analyse AlphaFold monomer V2.0 prediction for spbeta prophage-derived aminoglycoside… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: O32003
Type: protein
Length: 272 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xd10960F956646DE8b64d3598984c91C2d5Af3D7b
Molecule: Spbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein yokd
UniProt: O32003
Pockets: 1 · best druggability 0.50

Structure

1 distinct chain · 39% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Spbeta prophage-derived aminoglycoside N(3')-acetyltransferase-like protein yokd	protein	272	39% helix, 21% strand	O32003

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	223	0.50	0.75	35	empty

Compared structures

2NYG · Crystal structure of yokd protein from bacillus subtilis · an experimental structure of the same protein · chain A against A, TM-score 0.99
2NYG · Crystal structure of YokD protein from Bacillus subtilis · an experimental structure of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O32003
Elsewhere: UniProt O32003 · AlphaFold DB O32003

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