Research workbench
AlphaFold monomer V2.0 prediction for uncharacterized vacuolar membrane protein YNL115C (P53925)
Analyse AlphaFold monomer V2.0 prediction for uncharacterized vacuolar membrane protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P53925
- Type
- protein
- Length
- 644 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x914Cf855d9d82C2372728B1b657855010b64Bbfe
- Molecule
- Uncharacterized vacuolar membrane protein YNL115C
- UniProt
- P53925
- Pockets
- 9 · best druggability 0.77
Structure
1 distinct chain · 50% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized vacuolar membrane protein YNL115C | protein | 644 | 50% helix, 8% strand | P53925 |
Pockets
9 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 112 | 0.77 | 0.97 | 27 | empty |
| 2 | 296 | 0.70 | 0.84 | 46 | empty |
| 3 | 234 | 0.55 | 0.77 | 33 | empty |
| 4 | 140 | 0.52 | 0.80 | 27 | empty |
| 5 | 93 | 0.42 | 0.77 | 18 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P53925
- Elsewhere: UniProt P53925 · AlphaFold DB P53925
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