Research workbench
AlphaFold monomer V2.0 prediction for transposon TY2-LR1 gag-pol polyprotein (P0C2J3)
Analyse AlphaFold monomer V2.0 prediction for transposon TY2-LR1 gag-pol polyprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P0C2J3
- Type
- protein
- Length
- 1,770 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x73740485F5B55259adb07B1434381FeFf700D6e8
- Molecule
- Transposon TY2-LR1 gag-pol polyprotein
- UniProt
- P0C2J3
- Pockets
- 20 · best druggability 0.79
Structure
1 distinct chain · 27% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY2-LR1 gag-pol polyprotein | protein | 1770 | 27% helix, 14% strand | P0C2J3 |
Pockets
20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 957 | 0.79 | 0.81 | 89 | empty |
| 2 | 779 | 0.76 | 0.81 | 99 | empty |
| 3 | 785 | 0.69 | 0.76 | 71 | empty |
| 4 | 244 | 0.67 | 0.83 | 24 | empty |
| 5 | 447 | 0.62 | 0.77 | 37 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0C2J3
- Elsewhere: UniProt P0C2J3 · AlphaFold DB P0C2J3
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