Research workbench

AlphaFold monomer V2.0 prediction for zinc D-ala-D-ala carboxypeptidase (P00733)

Analyse AlphaFold monomer V2.0 prediction for zinc D-ala-D-ala carboxypeptidase (P00733) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

Accession: P00733
Type: protein
Length: 255 residues
Chains: 1
Collection: MolNFT v1 / AlphaFold
Contract: 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
Owner: 0xF3dC0C0AfbCaFe21EC13288d7b1F1aD875Dd78F1
Molecule: Zinc D-ala-D-ala carboxypeptidase
UniProt: P00733
Pockets: 2 · best druggability 0.32

Structure

1 distinct chain · 30% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Zinc D-ala-D-ala carboxypeptidase	protein	255	30% helix, 9% strand	P00733

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	58	0.32	0.76	17	empty
2	75	0.31	0.74	19	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

1LBU · Hydrolase metallo (zn) dd-peptidase · an experimental structure of the same protein · chain A against A, TM-score 0.83
1LBU · Hydrolase metallo (zn) dd-peptidase · an experimental structure of the same protein · chain A against A, TM-score 0.83

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00733
Elsewhere: UniProt P00733 · AlphaFold DB P00733

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.