Research workbench
AlphaFold monomer V2.0 prediction for uncharacterized outer membrane usher protein yhcd (P45420)
Analyse AlphaFold monomer V2.0 prediction for uncharacterized outer membrane usher… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- P45420
- Type
- protein
- Length
- 793 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x79a905d858Ce72991FD6E7a9C6498620f42E146D
- Molecule
- Uncharacterized outer membrane usher protein yhcd
- UniProt
- P45420
- Pockets
- 10 · best druggability 0.81
Structure
1 distinct chain · 6% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized outer membrane usher protein yhcd | protein | 793 | 6% helix, 57% strand | P45420 |
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 977 | 0.81 | 0.83 | 129 | empty |
| 2 | 475 | 0.72 | 0.82 | 54 | empty |
| 3 | 349 | 0.67 | 0.81 | 49 | empty |
| 4 | 155 | 0.61 | 0.84 | 26 | empty |
| 5 | 326 | 0.55 | 0.75 | 34 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45420
- Elsewhere: UniProt P45420 · AlphaFold DB P45420
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