Research workbench
AlphaFold monomer V2.0 prediction for transposon TY1-H gag-pol polyprotein (O13535)
Analyse AlphaFold monomer V2.0 prediction for transposon TY1-H gag-pol polyprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O13535
- Type
- protein
- Length
- 1,793 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xEc4C90d408De7142a2936ac29701e3ce1373d0a4
- Molecule
- Transposon TY1-H gag-pol polyprotein
- UniProt
- O13535
- Pockets
- 16 · best druggability 0.83
Structure
1 distinct chain · 29% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY1-H gag-pol polyprotein | protein | 1793 | 29% helix, 14% strand | O13535 |
Pockets
16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 907 | 0.83 | 0.85 | 103 | empty |
| 2 | 1192 | 0.76 | 0.78 | 90 | empty |
| 3 | 892 | 0.73 | 0.77 | 95 | empty |
| 4 | 494 | 0.67 | 0.78 | 40 | empty |
| 5 | 59 | 0.66 | 0.94 | 19 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O13535
- Elsewhere: UniProt O13535 · AlphaFold DB O13535
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