Research workbench
AlphaFold monomer V2.0 prediction for probable deoxycholate-binding periplasmic protein ygis (Q46863)
Analyse AlphaFold monomer V2.0 prediction for probable deoxycholate-binding periplasmic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q46863
- Type
- protein
- Length
- 535 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x930eD3AC96Fe0Ec77247D9AE4C54Bd92C627474C
- Molecule
- Probable deoxycholate-binding periplasmic protein ygis
- UniProt
- Q46863
- Pockets
- 5 · best druggability 0.83
Structure
1 distinct chain · 33% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable deoxycholate-binding periplasmic protein ygis | protein | 535 | 33% helix, 21% strand | Q46863 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 344 | 0.83 | 0.93 | 54 | empty |
| 2 | 191 | 0.61 | 0.83 | 30 | empty |
| 3 | 163 | 0.49 | 0.77 | 34 | empty |
| 4 | 65 | 0.35 | 0.78 | 15 | empty |
| 5 | 78 | 0.30 | 0.73 | 17 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q46863
- Elsewhere: UniProt Q46863 · AlphaFold DB Q46863
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