Research workbench
AlphaFold monomer V2.0 prediction for tRNA-modifying protein ygfz (Q8XD41)
Analyse AlphaFold monomer V2.0 prediction for tRNA-modifying protein ygfz (Q8XD41) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q8XD41
- Type
- protein
- Length
- 326 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xD8D28A040FBDd4fb271E64aaE6BF15F7e59D0A8E
- Molecule
- TRNA-modifying protein ygfz
- UniProt
- Q8XD41
- Pockets
- 4 · best druggability 0.73
Structure
1 distinct chain · 21% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA-modifying protein ygfz | protein | 326 | 21% helix, 33% strand | Q8XD41 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.73 | 0.98 | 17 | empty |
| 2 | 192 | 0.51 | 0.77 | 22 | empty |
| 3 | 55 | 0.30 | 0.75 | 15 | empty |
| 4 | 58 | 0.28 | 0.74 | 13 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8XD41
- Elsewhere: UniProt Q8XD41 · AlphaFold DB Q8XD41
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