Research workbench
AlphaFold monomer V2.0 prediction for pumilio domain-containing protein C56F2.08C (O60059)
Analyse AlphaFold monomer V2.0 prediction for pumilio domain-containing protein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O60059
- Type
- protein
- Length
- 661 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB35df660264f41795De49C83276C108A4ba91ADE
- Molecule
- Pumilio domain-containing protein C56F2.08C
- UniProt
- O60059
- Pockets
- 4 · best druggability 0.62
Structure
1 distinct chain · 44% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pumilio domain-containing protein C56F2.08C | protein | 661 | 44% helix, 3% strand | O60059 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 541 | 0.62 | 0.75 | 49 | empty |
| 2 | 271 | 0.50 | 0.74 | 27 | empty |
| 3 | 133 | 0.47 | 0.78 | 24 | empty |
| 4 | 78 | 0.33 | 0.74 | 16 | empty |
Compared structures
- 6NY5 · Crystal structure of the pum-hd domain of S. pombe PUF1 in complex with RNA · an experimental structure of the same protein · chain A against A, TM-score 0.57
- 6NY5 · Crystal structure of the PUM-HD domain of S. pombe Puf1 in complex with RNA · an experimental structure of the same protein · chain A against A, TM-score 0.57
- 6NX5 · Crystal structure of the RRM domain of S. pombe Puf1 in the P21 space group · an experimental structure of the same protein · chain A against A, TM-score 0.11
- 6NX5 · Crystal structure of the rrm domain of S. pombe PUF1 in the P21 space group · an experimental structure of the same protein · chain A against A, TM-score 0.11
- 6NWW · Crystal structure of the RRM domain of S. pombe Puf1 in the P212121 space group · an experimental structure of the same protein · chain A against A, TM-score 0.11
- 6NWW · Crystal structure of the rrm domain of S. pombe PUF1 in the P212121 space group · an experimental structure of the same protein · chain A against A, TM-score 0.11
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60059
- Elsewhere: UniProt O60059 · AlphaFold DB O60059
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