Research workbench
AlphaFold monomer V2.0 prediction for transposon TY2-GR1 gag-pol polyprotein (Q12337)
Analyse AlphaFold monomer V2.0 prediction for transposon TY2-GR1 gag-pol polyprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q12337
- Type
- protein
- Length
- 1,770 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xaa53776A41fB2e67da75A96E8a53746b6874aAB4
- Molecule
- Transposon TY2-GR1 gag-pol polyprotein
- UniProt
- Q12337
- Pockets
- 20 · best druggability 0.73
Structure
1 distinct chain · 27% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY2-GR1 gag-pol polyprotein | protein | 1770 | 27% helix, 14% strand | Q12337 |
Pockets
20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 804 | 0.73 | 0.78 | 57 | empty |
| 2 | 522 | 0.72 | 0.81 | 75 | empty |
| 3 | 496 | 0.71 | 0.81 | 67 | empty |
| 4 | 778 | 0.71 | 0.77 | 66 | empty |
| 5 | 256 | 0.70 | 0.85 | 32 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12337
- Elsewhere: UniProt Q12337 · AlphaFold DB Q12337
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