Research workbench
AlphaFold monomer V2.0 prediction for transposon TY1-GR3 gag-pol polyprotein (Q12316)
Analyse AlphaFold monomer V2.0 prediction for transposon TY1-GR3 gag-pol polyprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q12316
- Type
- protein
- Length
- 1,755 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xc0F878C3f3E2a1874e2A6daC80d429e553DdB0D5
- Molecule
- Transposon TY1-GR3 gag-pol polyprotein
- UniProt
- Q12316
- Pockets
- 19 · best druggability 0.77
Structure
1 distinct chain · 27% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY1-GR3 gag-pol polyprotein | protein | 1755 | 27% helix, 14% strand | Q12316 |
Pockets
19 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1061 | 0.77 | 0.79 | 96 | empty |
| 2 | 786 | 0.73 | 0.78 | 82 | empty |
| 3 | 186 | 0.71 | 0.88 | 29 | empty |
| 4 | 729 | 0.71 | 0.77 | 55 | empty |
| 5 | 383 | 0.63 | 0.79 | 51 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12316
- Elsewhere: UniProt Q12316 · AlphaFold DB Q12316
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