Research workbench
AlphaFold monomer V2.0 prediction for transposon TY1-GR1 gag-pol polyprotein (Q12141)
Analyse AlphaFold monomer V2.0 prediction for transposon TY1-GR1 gag-pol polyprotein… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- Q12141
- Type
- protein
- Length
- 1,755 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x9b4fafb91E864e57DfbcD53390687C2E0DC9e291
- Molecule
- Transposon TY1-GR1 gag-pol polyprotein
- UniProt
- Q12141
- Pockets
- 18 · best druggability 0.80
Structure
1 distinct chain · 27% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transposon TY1-GR1 gag-pol polyprotein | protein | 1755 | 27% helix, 14% strand | Q12141 |
Pockets
18 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1077 | 0.80 | 0.81 | 113 | empty |
| 2 | 294 | 0.67 | 0.82 | 34 | empty |
| 3 | 672 | 0.63 | 0.74 | 64 | empty |
| 4 | 211 | 0.60 | 0.81 | 32 | empty |
| 5 | 373 | 0.59 | 0.76 | 45 | empty |
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12141
- Elsewhere: UniProt Q12141 · AlphaFold DB Q12141
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