Research workbench
AlphaFold monomer V2.0 prediction for putative sporulation-specific glycosylase ydhd (O05495)
Analyse AlphaFold monomer V2.0 prediction for putative sporulation-specific glycosylase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O05495
- Type
- protein
- Length
- 420 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0x29079336903c8b941FeC32FB7511f5984fDd7f0c
- Molecule
- Putative sporulation-specific glycosylase ydhd
- UniProt
- O05495
- Pockets
- 3 · best druggability 0.75
Structure
1 distinct chain · 37% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative sporulation-specific glycosylase ydhd | protein | 420 | 37% helix, 24% strand | O05495 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.75 | 0.98 | 18 | empty |
| 2 | 210 | 0.49 | 0.75 | 28 | empty |
| 3 | 55 | 0.45 | 0.84 | 16 | empty |
Compared structures
- 3CZ8 · Crystal structure of putative sporulation-specific glycosylase ydhD from Bacillus subtilis · an experimental structure of the same protein · chain A against B, TM-score 0.66
- 3CZ8 · Crystal structure of putative sporulation-specific glycosylase ydhd from bacillus subtilis · an experimental structure of the same protein · chain A against B, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O05495
- Elsewhere: UniProt O05495 · AlphaFold DB O05495
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